Difference between revisions of "NIRS-EEG lab"
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(Created page with "PAGE UNDER CONSTRUCTION == Biophysics NIRS-EEG Lab - General information == *If you wanna book the NIRS-EEG Lab, please use Google Calendar. *Please, take notes in the lab j...") |
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*If you wanna book the NIRS-EEG Lab, please use Google Calendar. | *If you wanna book the NIRS-EEG Lab, please use Google Calendar. | ||
*Please, take notes in the lab journal about experiments that have been run | *Please, take notes in the lab journal about experiments that have been run | ||
| − | *Use protocols | + | *Use protocols for your study/experiments/pilots |
== Technical facilities == | == Technical facilities == | ||
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Here is an example script that includes the above mentioned steps and applies several fieldtrip functions. | Here is an example script that includes the above mentioned steps and applies several fieldtrip functions. | ||
| − | + | - NEEDS TO BE INSERTED - | |
Revision as of 16:27, 9 June 2015
PAGE UNDER CONSTRUCTION
Biophysics NIRS-EEG Lab - General information
- If you wanna book the NIRS-EEG Lab, please use Google Calendar.
- Please, take notes in the lab journal about experiments that have been run
- Use protocols for your study/experiments/pilots
Technical facilities
TDT
- 1 RZ6
- 1 RP2
- 2 RA16 (medusa)
EEG
- 32 channel water-based electrode system (TMSI, Mobita), including headcap(s)
- 72 channel REFA, including headcaps in 3 different sizes (TMSI)
- 16 channel REFA (TMSI)
- ring electrodes including separate caps for combined measurements with NIRS
- TMSI Polybench recording software
NIRS
- 2 x 24 channel system (Oxymon, Artinis) each consisting of 8 transmitters and 4 receivers (splitted fibers)
- sampling rate up to 250 Hz
- 8 AD channels (according to Artinis, they only sample at the rate of all other channels. Care needs to be taken, if sampling at low rates. Present your triggers for longer durations then)
- Oxysoft recording software
Prepared NIRS experiments
- Basic finger tapping experiment (blocked)
- Mapping experiments (blocked)
- Auditory oddball experiment (tones, event-related)
Prepared EEG experiments
- Frequency oddball
- Spatial oddball (2 speaker)
Basic NIRS analysis
Besides Marc's scripts for all steps during NIRS data analysis, you can start using the fieldtrip toolbox http://www.fieldtriptoolbox.org/development/nirs. Here is a general pipeline of what you may wanna do with your NIRS data.
- read raw data (.oxy3) recorded with the oxymon
- read trigger information from AD channels
- define your trial (pre- and poststimulus interval, event code)
- apply a filter
- segment continuous data into trials (epoching)
- convert data, i.e. changes in optical density to concentration changes
- average data per condition/event
- perform baseline correction
- plot single channels or a whole grid
- More things to do/program: do a reference channel subtraction, plot a topomap
Here is an example script that includes the above mentioned steps and applies several fieldtrip functions. - NEEDS TO BE INSERTED -