Difference between revisions of "Code"

From biophysics
Jump to navigation Jump to search
 
(3 intermediate revisions by the same user not shown)
Line 1: Line 1:
The code for running experiments and analysing data is all stored on [//gitlab.science.ru.nl gitlab].
+
this page can be deleted
 
 
== How can I access Gitlab?==
 
Login to [//gitlab.science.ru.nl gitlab] with your Science Faculty account. Then ask Marc to gain access to biophysics and biophysics_labs
 
 
 
== How can I get (clone) the code from the repository? ==
 
 
 
You can get the code from the repository in several ways, all with their own advantages.
 
 
 
=== Download zip-file ===
 
<todo>
 
=== Command Line Instructions ===
 
* Instal the GitHUB client [https://windows.github.com/ for Windows] or [https://mac.github.com/ for Mac], and add the repository via Command line instructions:
 
** '''Git global setup'''
 
*** git config --global user.name "Your Name"
 
*** git config --global user.email "your.e@mail.adress"
 
** '''Create a new repository'''
 
*** git clone https://gitlab.science.ru.nl/username/projectname.git
 
*** cd test
 
*** touch README.md
 
*** git add README.md
 
*** git commit -m "add README"
 
*** git push -u origin master
 
** '''Existing folder or Git repository'''
 
*** cd existing_folder
 
*** git init
 
*** git remote add origin https://gitlab.science.ru.nl/username/projectname.git
 
*** git push -u origin master
 
 
 
=== Use SourceTree ===
 
 
 
* Install the Git client [https://www.atlassian.com/software/sourcetree/overview Atlassian Sourcetree], and ''Clone'' the repository via a button press
 
 
 
== How can I get the changes others have made (fetch/pull)? ==
 
* In Github for Windows: the Sync button
 
* In Atlassian Sourcetree: the Pull button
 
 
 
== How can I put my changes of the code in the repository  (commit/push)?==
 
You should have Master rights to be able to upload your changes to the remote repository.
 
If you do not have own, you should work in a branch.
 
* In Github for Windows and in Atlassian Source Tree: push the Branch button, and give it a meaningful name (i.e. your first name)
 
Then you can upload
 
* In Github for Windows: Sync
 
* In Atlassian SourceTree: stage files - commit - push when commit
 
 
 
== Which repositories exist, and what are they for? ==
 
 
 
=== Biophysics ===
 
For experiments with sound localization, to analyse fast eye and head movements, to do bayesian data anaysis, and some other utilities
 
 
 
=== Matrix ===
 
MATLAB program for speech vs. noise experiments with vocoder options. The speech consists of 5 word sentences in Dutch or German.
 
 
 
N.B. The speech files are available on \\mbcogro-srv.science.ru.nl\mbcogro\install\matrixtest\Sounds
 
 
 
=== fNIRS ===
 
For analysis of NIRS measurements
 

Latest revision as of 11:39, 21 March 2024

this page can be deleted