Difference between revisions of "Code"

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The code for running experiments and analysing data is all stored on [//gitlab.science.ru.nl gitlab].
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==Introduction==
 
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To run experiments in a lab, you will need particular Matlab files that are stored in a [https://gitlab.science.ru.nl/marcw/experiment.git Git repository]
 
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== How can I access Gitlab?==
 
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Login to [//gitlab.science.ru.nl gitlab] with your Science Faculty account. Then ask Marc to gain access to biophysics and biophysics_labs
 
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== How can I get (clone) the code from the repository? ==
 
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You can get the code from the repository in several ways, all with their own advantages.
 
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=== Download zip-file ===
 
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=== Click ===
 
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* Instal the GitHUB client [https://windows.github.com/ for Windows] or [https://mac.github.com/ for Mac], and add the repository via Command line instructions:
 
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** '''Git global setup'''
 
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*** git config --global user.name "Your Name"
 
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*** git config --global user.email "your.e@mail.adress"
 
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** '''Create a new repository'''
 
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*** git clone https://gitlab.science.ru.nl/username/projectname.git
 
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*** cd test
 
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*** touch README.md
 
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*** git add README.md
 
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*** git commit -m "add README"
 
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*** git push -u origin master
 
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** '''Existing folder or Git repository'''
 
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*** cd existing_folder
 
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*** git init
 
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*** git remote add origin https://gitlab.science.ru.nl/username/projectname.git
 
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*** git push -u origin master
 
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* Install the Git client [https://www.atlassian.com/software/sourcetree/overview Atlassian Sourcetree], and ''Clone'' the repository via a button press
 
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== How can I get the changes others have made (fetch/pull)? ==
 
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* In Github for Windows: the Sync button
 
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* In Atlassian Sourcetree: the Pull button
 
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== How can I put my changes of the code in the repository  (commit/push)?==
 
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You should have Master rights to be able to upload your changes to the remote repository.
 
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If you do not have own, you should work in a branch.
 
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* In Github for Windows and in Atlassian Source Tree: push the Branch button, and give it a meaningful name (i.e. your first name)
 
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Then you can upload
 
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* In Github for Windows: Sync
 
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* In Atlassian SourceTree: stage files - commit - push when commit
 
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== Which repositories exist, and what are they for? ==
 
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=== Biophysics ===
 
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For running experiments in the [[Sphere_lab]], to analyse fast eye and head movements, to do bayesian data anaysis, and some other utilities
 

Latest revision as of 11:39, 21 March 2024

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