Difference between revisions of "Gitlab Repository Biofysica"
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Contains matlab scripts for bayesian data analysis based on programs for use with the book: | Contains matlab scripts for bayesian data analysis based on programs for use with the book: | ||
| − | Kruschke, J. K. (2015). Doing Bayesian Data Analysis, Second Edition: | + | [https://nyu-cdsc.github.io/learningr/assets/kruschke_bayesian_in_R.pdf Kruschke, J. K. (2015). Doing Bayesian Data Analysis, Second Edition]: |
| + | A Tutorial with R, JAGS, and Stan. Academic Press / Elsevier. | ||
| − | |||
| − | |||
====[https://gitlab.science.ru.nl/marcw/biofysica/-/tree/master/bayesdataanalysis/NHST?ref_type=heads NHST]==== | ====[https://gitlab.science.ru.nl/marcw/biofysica/-/tree/master/bayesdataanalysis/NHST?ref_type=heads NHST]==== | ||
Revision as of 14:26, 15 January 2024
Description
The biofysica repository is the main repository written by and used in the Biophysics Department. The code consists mainly of for matlab code for performing experiments and analysing experimental data.
Repository content
The repository has several directories:
TDT
Contains all relevant TDT manuals for ActiveX programming, RZ6, system3 and RPvdsEx programming.
MF1
Contains info about the MF1 speaker kit of tucker davis
PM2rRBOXRZ6
Contains info about connecting the RBOXRZ6 to the PM2r control port (DB25 digital I/O).
Users/Marc van Wanrooij
Contains some *.rcx files used by Marc van Wanrooij
audiogram
Contains matlab and rcx code for making an audiogram.
audition
Contains basic and advanced functions for manipulating audiological units and spectra.
HRTF
Contains matlab functions for calculating and manipulating head-related transfer functions.
localization
Contains matlab functions for localization of stimuli.
oldpa
Contains older matlab functions from the Panda toolbox.
backwards
Contains only the script loadtdt.m that reads a *.tdt file. It is no longer used.
bayesdataanalysis
Contains matlab scripts for bayesian data analysis based on programs for use with the book:
Kruschke, J. K. (2015). Doing Bayesian Data Analysis, Second Edition: A Tutorial with R, JAGS, and Stan. Academic Press / Elsevier.
NHST
Contains matlab script bayesfactor.m
anova
Contains matlab scripts for analysis of variance (anova)
binomial
Contains matlab scripts for binomial analysis
correlation
Contains a matlab script for Pearson Correlation
diagnose
Contains matlab scripts for Markov Chain Monte Carlo (MCMC) diagnostics